Example Queue Template

Cyclone Manual - Example Queue Template

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This is an example queue template for OpenPBS with cyclone parameters (Section 12.14) filled in.

Example 1

This script essentially creates a temporary directory on the server in /prd/RUN/{:directory:}, where {:directory:} is generated by cyclone at the time. It copies all the files over and runs cyclone on them. Following completion it copies all the files back to the original location.

Bash
1#!/bin/bash
2#PBS -l nodes=1:ncpus={:cpus:}
3#PBS -o {:cwd:}/pbs.log
4#PBS -j oe
5{:array:}
6umask 0002
7# might no be needed
8. /etc/bash.bashrc
9mkdir /prd/RUN/{:directory:}
10cp {:cwd:}/{:input-file:} /prd/RUN/{:directory:}/{:input-file:}
11cp {:cwd:}/{:mcnp-file:} /prd/RUN/{:directory:}/{:mcnp-file:}
12cd /prd/RUN/{:directory:}
13{:cyclone-path:}/{:cyclone:} -i {:input-file:}
14mkdir {:cwd:}/{:directory:}/
15mv /prd/RUN/{:directory:}/* {:cwd:}/{:directory:}/
16rm -rv /prd/RUN/{:directory:}

Example 2

This is a simpler script that just runs cyclone in place on the input.

Bash
1#!/bin/bash
2#PBS -l nodes=1:ncpus={:cpus:}
3#PBS -o {:cwd:}/pbs.log
4#PBS -j oe
5{:array:}
6umask 0002
7# might no be needed
8. /etc/bash.bashrc
9{:cyclone-path:}/{:cyclone:} -i {:input-file:}
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